pickLangmuir: Simulate parameters from the Langmuir Adsorption model

In stephaniehicks/quantroSim: Supporting Data Simulation R-package for quantro

Description

This is a helper function that points to the functions which contain the default parameters for each platform available in this package. This function can simulate parameters from the Langmuir model for each of the platforms available list.GEx.platforms and list.meth.platforms.

Usage

pickLangmuir(objectType, typePlatform, nProbes, nSamps, nGroups, mua = NULL,
  siga = NULL, mub = NULL, sigb = NULL, muOpt = NULL, sigOpt = NULL,
  muBG = NULL, sigBG = NULL, muERR = NULL, sigERR = NULL)

Arguments

objectType	Must be "simulateGExTruthObject" or "simulateMethTruthObject"
typePlatform	Must specify a platform from list.GEx.platforms or list.meth.platforms.
nProbes	number of probes
nSamps	number of samples in each group
nGroups	number of groups
mua	hyperparameter: mean of log normal distribution for a
siga	hyperparameter: variance of log normal distribution for a
mub	b hyperparameter: mean of log normal distribution for b
sigb	b hyperparameter: variance of log normal distribution for b
muOpt	hyperparameter: mean of log normal distribution for optical noise
sigOpt	hyperparameter: variance of log normal distribution for optical noise
muBG	hyperparameter: mean of log normal distribution for d
sigBG	hyperparameter: variance of log normal distribution for d
muERR	hyperparameter: mean of log normal distribution for measurement error
sigERR	hyperparameter: variance of log normal distribution for measurement error

Value

The output of this function is the output directly reported from the functions langmuirGExArrays and langmuirMethArrays.

Author(s)

Stephanie Hicks

Examples

ps <- pickLangmuir(objectType = "simulateMethTruthObject",
                   typePlatform = "methArrays", nProbes = 1e5,
                   nSamps = 5, nGroups = 2)

stephaniehicks/quantroSim documentation built on May 30, 2019, 3:17 p.m.