Man pages for stevehoang/assayr
Tools for analyzing biochemical assay data.
| anyBaseToDecimal | Convert from anybase to decimal |
| coa | CoA data from PureHoney. |
| coaPhotoBooth | CoA Bar Plot for Compound Dose Response |
| drcBreaks | Define nice breaks for dose response curves |
| drcLabels | Overwrite lowest value label with "0" for dose response... |
| drcPhotoBooth | DRC Curves in a standardized format |
| drcs | Fitted dose response models |
| fillNAs | Fill NAs in vector with neighboring values |
| geom_mean | Geometric mean |
| geom_mean_se | Geometric standard error of the mean |
| getCurves | Generate y values in increments of a given x range. |
| getEC50 | Get the EC50 value of a 4-parmeter log-logistic function |
| getHillSlope | Get the Hill coefficient of a 4-parmeter log-logistic... |
| getLowerAsym | Get the y value of the lower asymptote in a 4-parmeter... |
| getMetaData | Import meta data |
| getUpperAsym | Get the y value of the upper asymptote in a 4-parmeter... |
| getYBounds | Get the bottom and top of a log-logistic curve in a given x... |
| inversePredLL4 | Predict x from y in a 4-parameter log-logistic model |
| inversePredLm | Predict x from y in a linear model |
| makeCIs | Build plot-ready confidence intervals |
| makeLogFCs | Calculate log fold changes and associated p-values. |
| makeSerialDilution | Make a vector of serially halved values. |
| meltPlate | Melt a data frame from plate format to long format |
| meltPlateXlsx | Read xlsx data in plate format and convert to long format |
| newZeros | Convert concentrations of zero to non-zero values in dose... |
| outputPlotsAsPdfs | Export plots |
| outputPlotsAsPngs | Export plots |
| predDRC | Predict y from x in a log-logistic model |
| readCFX | Generic parser for Biorad CFX thermocycler |
| readFLUOstar | Generic parser for Omega FluoStar plate analyzer |
| readMolDev | Parser for Molecular Devices Output |
| readPHAssay | Generic parser for PureHoney Assay layouts |
| readPHRaw | PureHoney Assay Result Reader |
| robustifyDrc | Make a robust DRC estimate using a method based on Nguyen et... |
| robusty | Bastard child of 'robustifyDRC()' |
| theme_assayr | Complete theme for assay report default |
