fastqcBasic: Extracts the basic summary from fastqc reports.
In steveped/fastqcWrap: Provides wrappers to FastQC from within R
Description
Usage
Arguments
Details
Value
Author(s)
Description
Extracts the basic summary for fastq files after running fastqc.
Usage
1
fastqcBasic(fqNames, qcDir)
Arguments
fqNames
a vector of filenames to extract the totals for.
qcDir
the directory to look for the FASTQC reports
Details
Extracts the basic summary for fastq files after running fastqc.
Value
a data.frame with the basic summary information as contained in FASTQC reports
Author(s)
Steve Pederson <stephen.pederson@adelaide.edu.au>
steveped/fastqcWrap documentation built on May 30, 2019, 5:39 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Extracts the basic summary for fastq files after running fastqc.
Usage
1 | fastqcBasic(fqNames, qcDir)
|
Arguments
fqNames |
a vector of filenames to extract the totals for. |
qcDir |
the directory to look for the FASTQC reports |
Details
Extracts the basic summary for fastq files after running fastqc.
Value
a data.frame with the basic summary information as contained in FASTQC reports
Author(s)
Steve Pederson <stephen.pederson@adelaide.edu.au>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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