readOverSeq: Extract the Over-represented Sequence Information
In steveped/fastqcWrap: Provides wrappers to FastQC from within R
Description
Usage
Arguments
Details
Value
Author(s)
Description
Look through the .zip file produced by FASTQC to obtain the over-represented sequence information
Usage
1
readOverSeq(fqName, qcDir)
Arguments
fqName
the filename to extract the totals for.
This should be the name of a single fastq file.
qcDir
the directory to look in for the FASTQC reports
Details
Look in a .zip file, as produced by FASTQC, and extract any information about over-represented sequences
Value
A list with components $summary and $status
The component summary contains a data.frame with columns corresponding to the original report.
The component $status returns the PASS/FAIL/WARN status
Author(s)
Steve Pederson <stephen.pederson@adelaide.edu.au>
steveped/fastqcWrap documentation built on May 30, 2019, 5:39 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Look through the .zip file produced by FASTQC to obtain the over-represented sequence information
Usage
1 | readOverSeq(fqName, qcDir)
|
Arguments
fqName |
the filename to extract the totals for. This should be the name of a single fastq file. |
qcDir |
the directory to look in for the FASTQC reports |
Details
Look in a .zip file, as produced by FASTQC, and extract any information about over-represented sequences
Value
A list with components $summary and $status
The component summary contains a data.frame with columns corresponding to the original report.
The component $status returns the PASS/FAIL/WARN status
Author(s)
Steve Pederson <stephen.pederson@adelaide.edu.au>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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