API for steverozen/DBSverify
Analyze Next Generation Sequencing Data to Verify Somatic Double-BaseSubstituion (DBS) Calls
| Global functions | |
|---|---|
| CategorizeReads | Man page Source code |
| CheckBAM | Source code |
| CreateBAMSliceFileSamtools | Man page Source code |
| DBSConclusion | Man page Source code |
| DBS_conclusion_1_row | Man page Source code |
| GetAllBAMSlicesSamtools | Man page Source code |
| HMF_prep_1_BED_and_DBS_VCF | Source code |
| HMF_prep_BEDs_and_DBS_VCFs | Source code |
| IDVector | Source code |
| PCAWG_fuse_sample_sheet_and_collab_manifest | Source code |
| PCAWG_join_callers | Source code |
| PCAWG_merge_DBS_calls_one_row | Source code |
| PCAWG_merge_callers | Source code |
| PCAWG_prep_BAM_list_and_BEDs | Man page Source code |
| PCAWG_prep_VCFs_and_BEDs_from_table | Source code |
| PCAWG_prep_all_Collaboratory_VCFs_and_BEDs | Source code |
| PCAWG_read_table_and_evaluate_DBS | Man page Source code |
| ReadDBSVCF | Source code |
| ReadSamfile | Man page Source code |
| Read_DBS_VCF_and_BAMs_to_verify_DBSs | Man page Source code |
| Read_SBS_VCF_and_BAMs_to_verify_DBSs | Man page Source code |
| RegressSAMDirectory | Man page Source code |
| Remove_non_canonical_chromosomes | Source code |
| Slice2ReadSupport | Man page Source code |
| SummarizeReadSupportFromSlices | Source code |
| TestBAMAndSamtools | Source code |
| VCF_to_BED | Source code |
| VerifyDBSVcf | Man page Source code |
| create_IGV_snapshot_script | Source code |
| for.testing.process.one.row | Source code |
| join_old_and_new_vcf | Source code |
| prep_DBS_and_adjacent_SBS | Source code |
| remove_named_column | Source code |
| test_create_IGV_snapshot_script | Source code |
