CreateBAMSliceFileSamtools: Create a BAM slice as a SAM file using the samtools...

In steverozen/DBSverify: Analyze Next Generation Sequencing Data to Verify Somatic Double-BaseSubstituion (DBS) Calls

Description

Create a BAM slice as a SAM file using the samtools executable.

Usage

CreateBAMSliceFileSamtools(BAM.name, CHROM, POS, padding = 10, save.file.path)

Arguments

BAM.name	The input BAM file name.
CHROM	The chromosome from which to slice.
POS	The position in CHROM from which to slice.
padding	The number of base pairs on each side of POS to take.
save.file.path	Where to save the sam file.

Value

The path of the SAM file that contains the BAM slice.

steverozen/DBSverify documentation built on Dec. 23, 2021, 5:34 a.m.