Slice2ReadSupport: Calculate the support for a putative DBS from the SAM slice...
In steverozen/DBSverify: Analyze Next Generation Sequencing Data to Verify Somatic Double-BaseSubstituion (DBS) Calls
View source: R/Slice2ReadSupport.R
Description
Calculate the support for a putative DBS from the SAM slice containing the overlapping reads.
Usage
1
Slice2ReadSupport(slice.dir, CHROM, POS, REF, ALT)
Arguments
slice.dir
The directory containing the SAM slices.
CHROM
The chromosome identifier.
POS
The first position of the DBS.
REF
The reference variant.
ALT
The alternate variant.
steverozen/DBSverify documentation built on Dec. 23, 2021, 5:34 a.m.
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View source: R/Slice2ReadSupport.R
Description
Calculate the support for a putative DBS from the SAM slice containing the overlapping reads.
Usage
1 | Slice2ReadSupport(slice.dir, CHROM, POS, REF, ALT)
|
Arguments
slice.dir |
The directory containing the SAM slices. |
CHROM |
The chromosome identifier. |
POS |
The first position of the DBS. |
REF |
The reference variant. |
ALT |
The alternate variant. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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