PCAWG_prep_BAM_list_and_BEDs: Specialized function for processing PCAWG Collaboratory BAMS.
In steverozen/DBSverify: Analyze Next Generation Sequencing Data to Verify Somatic Double-BaseSubstituion (DBS) Calls
View source: R/PCAWG_prep_BAM_list_and_BEDs.R
Description
This function is unfinished; it would need to be completed to generate
a table with bed files and instructions for miniBAMs for tumor BAMS.
However, this is not necessary as we already have the
necessary miniBAMs for donors with single tumor samples.
Usage
1
PCAWG_prep_BAM_list_and_BEDs(only.multiple.tumors.per.normal = TRUE)
Arguments
only.multiple.tumors.per.normal
If TRUE only generate output
for tumors from donors with multiple tumor VCF? files.
steverozen/DBSverify documentation built on Dec. 23, 2021, 5:34 a.m.
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View source: R/PCAWG_prep_BAM_list_and_BEDs.R
Description
This function is unfinished; it would need to be completed to generate a table with bed files and instructions for miniBAMs for tumor BAMS. However, this is not necessary as we already have the necessary miniBAMs for donors with single tumor samples.
Usage
1 | PCAWG_prep_BAM_list_and_BEDs(only.multiple.tumors.per.normal = TRUE)
|
Arguments
only.multiple.tumors.per.normal |
If |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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