Man pages for steverozen/mSigBG
Separate Background Mutational Signature from Signature Due to a Mutagen
| background.info | Specifications of background signatures |
| background.spectra | Background spectra for the HepG2 and MCF-10A cell lines. |
| example.spectra | Example spectra of cell lines exposed to cisplatin. |
| LLHOfSignatureGivenSpectrum | The log likelihood of a *single* observed spectrum given the... |
| LLHSpectrumNegBinom | Likelihood that 1 observed spectrum was generated from a... |
| MakeBackgroundInfo | Estimate a background signature and its characteristics. |
| MeanOfSpectraAsSig | Return the mean of multiple spectra as a signature. |
| NegLLHOfSignature | Objective function for estimating a background signature from... |
| ObjFn1 | Objective function for 'SeparateSignatureFromBackground'. |
| Plot1StackedSpectrum | Plot a spectrum as a stacked bar chart |
| PlotSpectraAsSigsWithUncertainty | Convert spectra to signatures and then plot mean with "error"... |
| SeparateSignatureAndSpectra | Calculate the inferred target signature and inferred... |
| SeparateSignatureFromBackground | Estimate a signature from experimentally exposed spectra... |
| SeparateSignatureFromBackgroundOptions | Return a default value to pass as the 'm.opts' argument to... |
