ObjFn1: Objective function for 'SeparateSignatureFromBackground'.
In steverozen/mSigBG: Separate Background Mutational Signature from Signature Due to a Mutagen
View source: R/SeparateBackground.R
ObjFn1 R Documentation
Objective function for SeparateSignatureFromBackground.
Description
Objective function for SeparateSignatureFromBackground.
Usage
ObjFn1(est.target.sig.and.b, obs.spectra, bg.sig.info)
Arguments
est.target.sig.and.b
A numeric vector of which elements
1:96 are the signature (as a vector) and the remaining elements
are the coefficients for each input spectrum in obs.spectra.
obs.spectra
The observed spectra, which may be the
sum of the activities of the background signature and the signature
of an experimental treatment.
bg.sig.info
Information on the background signature. See for example
background.info, e.g. background.info[["HepG2"]].
The caller will seek to minimize the value of this function.
steverozen/mSigBG documentation built on Nov. 4, 2022, 10:58 a.m.
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View source: R/SeparateBackground.R
| ObjFn1 | R Documentation |
Objective function for SeparateSignatureFromBackground.
Description
Objective function for SeparateSignatureFromBackground.
Usage
ObjFn1(est.target.sig.and.b, obs.spectra, bg.sig.info)
Arguments
est.target.sig.and.b |
A numeric vector of which elements
1:96 are the signature (as a vector) and the remaining elements
are the coefficients for each input spectrum in |
obs.spectra |
The observed spectra, which may be the sum of the activities of the background signature and the signature of an experimental treatment. |
bg.sig.info |
Information on the background signature. See for example
The caller will seek to minimize the value of this function. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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