ComponentDiagnosticPlotting: Generate diagnostic plots from the return value of...

In steverozen/mSigHdp: Mutational signature discovery using HDP (hierarchical Dirichlet process)

Generate diagnostic plots from the return value of CombineChainsAndExtractSigs

Description

Generate diagnostic plots from the return value of CombineChainsAndExtractSigs

Usage

ComponentDiagnosticPlotting(retval, input.catalog, out.dir, verbose)

Arguments

retval	Return from CombineChainsAndExtractSigs.
input.catalog	Input spectra catalog as a matrix.
out.dir	If not NULL then a character string specifying a directory that will be created for the output, including csv files and plots (pdfs) of extracted signatures and their exposures. If NULL no directory will be created and no files will be generated.
verbose	If TRUE then message progress information.

Details

Generates the plots

• diagnostics.signature.exposure.each.sample.pdf

• diagnostics.components.in.which.gibbs.samples.pdf

• diagnostics.likelihood.pdf

• diagnostics.numcluster.pdf

• diagnostics.signatures.pdf

steverozen/mSigHdp documentation built on Feb. 6, 2023, 1:36 a.m.