ExtendBurnin: Extend burnin iterations generated from 'Burnin'

In steverozen/mSigHdp: Mutational signature discovery using HDP (hierarchical Dirichlet process)

Extend burnin iterations generated from Burnin

Description

Extend burnin iterations generated from Burnin

Usage

ExtendBurnin(
  previous.burnin.output,
  burnin = 5000,
  cpiter = 3,
  burnin.verbosity = 0,
  seedNumber = NULL
)

Arguments

previous.burnin.output	Output from Burnin or the file path of a checkpoint file written by Burnin.
burnin	The number of burnin iterations to perform.
cpiter	The number of iterations of concentration parameter sampling to perform after each main Gibbs-sample iteration. (See Teh et al., "Hierarchical Dirichlet Processes", Journal of the American Statistical Association 2006;101(476):1566-1581 (https://doi.org/10.1198/016214506000000302).)
burnin.verbosity	Number that controls whether progress messages are printed.
seedNumber	A random seed for reproducible results.

Value

The same type of object as returned from Burnin.

The envisioned application is extending burnins from burnin checkpoints.

steverozen/mSigHdp documentation built on Feb. 6, 2023, 1:36 a.m.