SaveAnalysis: Save the analysis from 'CombineChainsAndExtractSigs' to...

In steverozen/mSigHdp: Mutational signature discovery using HDP (hierarchical Dirichlet process)

Save the analysis from CombineChainsAndExtractSigs to files.

Description

Save the analysis from CombineChainsAndExtractSigs to files.

Usage

SaveAnalysis(
  retval,
  input.catalog,
  out.dir = NULL,
  verbose = TRUE,
  overwrite = TRUE,
  diagnostic.plot = TRUE
)

Arguments

retval	The output from CombineChainsAndExtractSigs.
input.catalog	input catalog matrix or path to file with input catalog
out.dir	If not NULL then a character string specifying a directory that will be created for the output, including csv files and plots (pdfs) of extracted signatures and their exposures. If NULL no directory will be created and no files will be generated.
verbose	If TRUE then message progress information.
overwrite	If TRUE overwrite out.dir if it exists, otherwise raise an error.
diagnostic.plot	If TRUE plot diagnostic plots in out.dir.

steverozen/mSigHdp documentation built on Feb. 6, 2023, 1:36 a.m.