R/SimInf-package.R

In stewid/SimInf: A Framework for Data-Driven Stochastic Disease Spread Simulations

## This file is part of SimInf, a framework for stochastic
## disease spread simulations.
##
## Copyright (C) 2015 -- 2023 Stefan Widgren
##
## SimInf is free software: you can redistribute it and/or modify
## it under the terms of the GNU General Public License as published by
## the Free Software Foundation, either version 3 of the License, or
## (at your option) any later version.
##
## SimInf is distributed in the hope that it will be useful,
## but WITHOUT ANY WARRANTY; without even the implied warranty of
## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
## GNU General Public License for more details.
##
## You should have received a copy of the GNU General Public License
## along with this program.  If not, see <https://www.gnu.org/licenses/>.

##' @importClassesFrom Matrix dgCMatrix
##' @importFrom digest digest
##' @importFrom graphics boxplot
##' @importFrom graphics contour
##' @importFrom graphics grconvertY
##' @importFrom graphics lines
##' @importFrom graphics legend
##' @importFrom graphics mtext
##' @importFrom graphics pairs
##' @importFrom graphics par
##' @importFrom graphics plot
##' @importFrom graphics polygon
##' @importFrom graphics rug
##' @importFrom grDevices adjustcolor
##' @importFrom grDevices rainbow
##' @importFrom MASS ginv
##' @importFrom MASS kde2d
##' @importFrom Matrix Matrix
##' @importFrom Matrix sparseMatrix
##' @importFrom methods as
##' @importFrom methods is
##' @importFrom methods new
##' @importFrom methods show
##' @importFrom methods slot
##' @importFrom methods validObject
##' @importFrom stats ave
##' @importFrom stats cov
##' @importFrom stats density
##' @importFrom stats logLik
##' @importFrom stats optim
##' @importFrom stats quantile
##' @importFrom stats xtabs
##' @importFrom tools Rcmd
##' @importFrom utils capture.output
##' @importFrom utils data
##' @importFrom utils getParseData
##' @importFrom utils packageVersion
##' @importFrom utils setTxtProgressBar
##' @importFrom utils txtProgressBar
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