Files in stewid/SimInf
A Framework for Data-Driven Stochastic Disease Spread Simulations

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
Makefile
NAMESPACE
NEWS.md R/SEIR.R R/SIR.R R/SISe.R R/SISe3.R R/SISe3_sp.R R/SISe_sp.R R/SimInf.R R/SimInf_events.R R/SimInf_model.R R/check_arguments.R R/degree.R R/distance.R R/mparse.R R/openmp.R R/package_skeleton.R R/plot.R R/prevalence.R R/print.R R/punchcard.R R/run.R R/run_outer.R R/trajectory.R README.Rmd README.md
appveyor.yml
cleanup
cleanup.win
configure
configure.ac
configure.win
data/events_SISe3.rda
data/nodes.rda
data/u0_SISe3.rda
inst/CITATION
inst/include/SimInf.h
logo/logo.png
logo/logo.svg
logo/logo.tex
man-roxygen/G-param.R man-roxygen/S-param.R man-roxygen/U-param.R man-roxygen/beta-param.R man-roxygen/beta-section.R man-roxygen/events-param.R man-roxygen/gdata-param.R man-roxygen/ldata-param.R man-roxygen/mparse-example.R man-roxygen/phi-param.R man-roxygen/tspan-param.R man-roxygen/u0-param.R man/C_code.Rd man/Nn.Rd man/SEIR-class.Rd man/SEIR.Rd man/SIR-class.Rd man/SIR.Rd man/SISe-class.Rd man/SISe.Rd man/SISe3-class.Rd man/SISe3.Rd man/SISe3_sp-class.Rd man/SISe3_sp.Rd man/SISe_sp-class.Rd man/SISe_sp.Rd man/SimInf.Rd man/SimInf_events-class.Rd man/SimInf_events.Rd man/SimInf_model-class.Rd man/SimInf_model.Rd man/as.data.frame.SimInf_events.Rd man/boxplot-SimInf_model-method.Rd man/distance_matrix.Rd man/events.Rd man/events_SEIR.Rd man/events_SIR.Rd man/events_SISe.Rd man/events_SISe3.Rd man/gdata-set.Rd man/gdata.Rd man/indegree.Rd man/ldata.Rd man/mparse.Rd man/nodes.Rd man/outdegree.Rd man/package_skeleton.Rd man/pairs-SimInf_model-method.Rd man/plot-SimInf_events-method.Rd man/plot.Rd man/prevalence.Rd man/punchcard-set.Rd man/run.Rd man/run_outer.Rd man/select_matrix-set.Rd man/select_matrix.Rd man/set_num_threads.Rd man/shift_matrix-set.Rd man/shift_matrix.Rd man/show-SimInf_events-method.Rd man/show-SimInf_model-method.Rd man/summary-SimInf_events-method.Rd man/summary-SimInf_model-method.Rd man/trajectory.Rd man/u0_SEIR.Rd man/u0_SIR.Rd man/u0_SISe.Rd man/u0_SISe3.Rd
src/Makevars.in
src/Makevars.win
src/SimInf.c
src/SimInf.h
src/init.c
src/misc/SimInf_arg.c
src/misc/SimInf_arg.h
src/misc/SimInf_forward_euler_linear_decay.c
src/misc/SimInf_forward_euler_linear_decay.h
src/misc/SimInf_ldata.c
src/misc/SimInf_local_spread.c
src/misc/SimInf_local_spread.h
src/misc/SimInf_openmp.c
src/misc/SimInf_openmp.h
src/misc/SimInf_trajectory.c
src/misc/binheap.c
src/misc/binheap.h
src/misc/kbtree.h
src/misc/kvec.h
src/models/SEIR.c
src/models/SIR.c
src/models/SISe.c
src/models/SISe3.c
src/models/SISe3_sp.c
src/models/SISe_sp.c
src/solvers/SimInf_solver.c
src/solvers/SimInf_solver.h
src/solvers/aem/SimInf_solver_aem.c
src/solvers/aem/SimInf_solver_aem.h
src/solvers/ssm/SimInf_solver_ssm.c
src/solvers/ssm/SimInf_solver_ssm.h
tests/SEIR.R tests/SIR.R tests/SISe.R tests/SISe3.R tests/SISe3_sp.R tests/SISe_sp.R tests/SimInf.R tests/SimInf_events.R tests/SimInf_model.R tests/ldata_sp.R tests/measures.R tests/mparse.R tests/package_skeleton.R tests/phi.R tests/prevalence.R tests/punchcard.R tests/run_outer.R tests/sample_select.R tests/solver_aem.R tests/util/check.R
vignettes/SimInf.Rnw
vignettes/SimInf.bib
vignettes/img/SIR.pdf
vignettes/img/SIR.svg
vignettes/img/SIR.tex
vignettes/img/SISe3_sp.pdf
vignettes/img/SISe3_sp.svg
vignettes/img/SISe3_sp.tex
vignettes/img/SISe_sp-prevalence.pdf vignettes/img/enter.pdf
vignettes/img/enter.svg
vignettes/img/enter.tex
vignettes/img/exit.pdf
vignettes/img/exit.svg
vignettes/img/exit.tex
vignettes/img/external-shift.pdf
vignettes/img/external-shift.svg
vignettes/img/external-shift.tex
vignettes/img/external.pdf
vignettes/img/external.svg
vignettes/img/external.tex
vignettes/img/internal.pdf
vignettes/img/internal.svg
vignettes/img/internal.tex
vignettes/img/mparse-epicurve.pdf vignettes/img/overview.pdf
vignettes/img/overview.svg
vignettes/img/overview.tex
vignettes/img/predator-prey.png
vignettes/img/temporal-network.pdf
vignettes/img/temporal-network.svg
vignettes/img/temporal-network.tex
stewid/SimInf documentation built on Feb. 6, 2020, 12:14 a.m.