Metadata: Mass spectrometry data for meta analysis

In stuchly/MetaMass: Tools for Mass Spectrometry data meta-analysis

Description

This data set can be used as metadata for analysis of mass spectrometry data

Usage

Christoforou
Bileck
Rodriguez
Andreyev
Thakar
Larance
Carvalho

or as extdata

filename<-system.file("extdata","Christoforou.txt",package="MetaMass")
filename<-system.file("extdata","Bileck.txt",package="MetaMass")
filename<-system.file("extdata","Rodriguez.txt",package="MetaMass")
filename<-system.file("extdata","Andreyev.txt",package="MetaMass")
filename<-system.file("extdata","Thakar.txt",package="MetaMass")
filename<-system.file("extdata","Larance.txt",package="MetaMass")
filename<-system.file("extdata","Carvalho.txt",package="MetaMass")

Format

data.frame

[,1] genename character

[,2:ncol] numerical values separated by empty columns

Details

These data are referred in the article (and in the Walkthrough section in the vignette as follows

Christoforou - study1

Bileck - study9

Rodriguez - study2

Andreyev - study3

Thakar - study10

Larance - study11

Carvalho - study4

References

Christoforou, Mulvey, Breckels, et al. (2016) 10.1038/ncomms9992

Ana M. Rodriguez-Pineiro, Sjoerd van der Post, Malin E. V. Johansson, Kristina A. Thomsson, Alexey I. Nesvizhskii, and Gunnar C. Hansson (2012) 10.1021/pr2010988

Andreyev, Shen, Guan, et al. (2009) 10.1074/mcp.M900432-MCP200 Carvalho, Ribeiro, Voabil, Penque, Jensen, Molina, and Matthiesen (2014) 10.1074/mcp.M113.034363

Bileck, Kreutz, Muqaku, Slany, and Gerner (2014) 10.1021/pr5008625

Thakar, Karaca, Port, Urlaub, and Kehlenbach (2012) 10.1074/mcp.M112.024877

Larance, Kirkwood, Xirodimas, Lundberg, Uhlen, and Lamond (2011) 10.1074/mcp.M111.014407

Ana Sofia Carvalho, Helena Ribeiro, Paula Voabil, Deborah Penque, Ole N Jensen, Henrik Molina, Rune Matthiese (2014) 10.1074/mcp.M113.034363

Examples

data(Rodriguez)
res2<-analyze.MSfile(Rodriguez,markers=c(3:7),output.cdt="outcdt41.cdt",clusters=1000,Metadata="Christoforou",group=0,cluster.metadata=TRUE)

stuchly/MetaMass documentation built on Nov. 14, 2019, 10:58 p.m.