An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples

analyse_individuals | Quick analysis and visualization of the... |

analyse_integrated_individuals | Quick analysis and visualization of the... |

analyse_integrated_variables | Quick analysis and visualization of the integrated Assays by... |

analyse_variables | Quick analysis and visualization of the integrated Assays by... |

chart_correlation | Pairwise correlation, scatter plot and histogram on selected... |

cluster | Cluster data points |

cluster_boxplot | Comparison of clusters by boxplot |

cluster_parameters | Detection of algorithm and number of clusters |

create_group | Subsets an Assay dataframe into smaller groups |

descriptor | Distribution of Assays as percentage of cell lines |

extract | extraction of projected cooordinates from "PCA" object. |

extract_assay | Data extraction from "MultiAssayExperiment" object |

integrate_pca | Integration of multiple Assays into linear combinations by... |

integrate_variables | Integration of an experiment/ Assay done on many Cell lines/... |

intersect | support function of prepareDataset |

merge_cells | Storage of intersected factors from multiple cell types as... |

plot_density | Visualization of Density of various groups on Principal... |

plot_density_3D | Visualization of 3D Density of various groups on Principal... |

plot_integrated_density | Visualization of Density of various groups on Principal... |

plot_integrated_density_3D | Visualization of 3D Density of various groups on Principal... |

prepare_dataset | Intersects and merge data from multiple experiments into a... |

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