Man pages for subhadeep1024/OMICsPCA
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples

analyse_individualsQuick analysis and visualization of the...
analyse_integrated_individualsQuick analysis and visualization of the...
analyse_integrated_variablesQuick analysis and visualization of the integrated Assays by...
analyse_variablesQuick analysis and visualization of the integrated Assays by...
chart_correlationPairwise correlation, scatter plot and histogram on selected...
clusterCluster data points
cluster_boxplotComparison of clusters by boxplot
cluster_parametersDetection of algorithm and number of clusters
create_groupSubsets an Assay dataframe into smaller groups
descriptorDistribution of Assays as percentage of cell lines
extractextraction of projected cooordinates from "PCA" object.
extract_assayData extraction from "MultiAssayExperiment" object
integrate_pcaIntegration of multiple Assays into linear combinations by...
integrate_variablesIntegration of an experiment/ Assay done on many Cell lines/...
intersectsupport function of prepareDataset
merge_cellsStorage of intersected factors from multiple cell types as...
plot_densityVisualization of Density of various groups on Principal...
plot_density_3DVisualization of 3D Density of various groups on Principal...
plot_integrated_densityVisualization of Density of various groups on Principal...
plot_integrated_density_3DVisualization of 3D Density of various groups on Principal...
prepare_datasetIntersects and merge data from multiple experiments into a...
subhadeep1024/OMICsPCA documentation built on Sept. 30, 2018, 1 p.m.