Man pages for subhadeep1024/OMICsPCA
An R package for quantitative integration and analysis of multiple omics assays from heterogeneous samples
| analyse_individuals | Quick analysis and visualization of the... |
| analyse_integrated_individuals | Quick analysis and visualization of the... |
| analyse_integrated_variables | Quick analysis and visualization of the integrated Assays by... |
| analyse_variables | Quick analysis and visualization of the integrated Assays by... |
| chart_correlation | Pairwise correlation, scatter plot and histogram on selected... |
| cluster | Cluster data points |
| cluster_boxplot | Comparison of clusters by boxplot |
| cluster_parameters | Detection of algorithm and number of clusters |
| create_group | Subsets an Assay dataframe into smaller groups |
| descriptor | Distribution of Assays as percentage of cell lines |
| extract | extraction of projected cooordinates from "PCA" object. |
| extract_assay | Data extraction from "MultiAssayExperiment" object |
| integrate_pca | Integration of multiple Assays into linear combinations by... |
| integrate_variables | Integration of an experiment/ Assay done on many Cell lines/... |
| intersect | support function of prepareDataset |
| merge_cells | Storage of intersected factors from multiple cell types as... |
| plot_density | Visualization of Density of various groups on Principal... |
| plot_density_3D | Visualization of 3D Density of various groups on Principal... |
| plot_integrated_density | Visualization of Density of various groups on Principal... |
| plot_integrated_density_3D | Visualization of 3D Density of various groups on Principal... |
| prepare_dataset | Intersects and merge data from multiple experiments into a... |
