descriptor: Distribution of Assays as percentage of cell lines

Description Usage Arguments Value Author(s) Examples

View source: R/descriptor.R

Description

descriptor() produces panels of boxplots displaying the distribution of various factors(e.g. ChIP-seq of H3k9ac histone modification) in percentage of cell lines.

choice = 1 output is collection of boxplots explaining the distribution of percentage of cell lines having or overlapping with the input factors (e.g. H3k9ac).

choice = 2 displays the distribution of percentage of cell lines having or overlapping with increasing number of factors for the selected group (e.g. WE or RE etc). If this option is selected, then a group name should be provided through choice2group.

Usage

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descriptor(name, factors, groups,
choice = 1, choice2group = NULL, title = NULL,
groupinfo = NULL)

Arguments

name

Name of the "MultiAssayExperiment" object containing the assay data

factors

A vector containing the name of the Assays

groups

Name of all or subset of groups

choice

Numerical value between 1 and 2. See Description and vignettes for details of plots generated by this 2 choices

choice2group

Used when choice is 2. This argument allows a name of group.

title

Title of the plot

groupinfo

output of create_group() or similar object

Value

Displays various plots as per the combination of various input arguments.

Author(s)

Subhadeep Das <subhadeep1024@gmail.com>

Examples

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descriptor(name = multi_assay,
factors = c(
"H2az","H3k9ac","H3k4me1"),
groups = c("WE","RE","IntE","NE"),
choice = 1,
title = "Distribution of percentage of cell types overlapping
with various factors",
groupinfo = groupinfo_ext)

subhadeep1024/OMICsPCA documentation built on March 17, 2020, 5:23 p.m.