chart_correlation: Pairwise correlation, scatter plot and histogram on selected...

Description Usage Arguments Value Author(s) Examples

View source: R/chart_correlation.R

Description

This function creates pairwise correlation plots and tables; scatter plots and histograms on selected groups. The type of results should be passed through the argument 'choice'. This is a wrapper on various functions and thus can take additional and non-conflicting arguments specific to them.

Usage

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chart_correlation(name, Assay, groups, choice,
groupinfo = NULL,
...)

Arguments

name

Name of the "MultiAssayExperiment" object containing the assay data

Assay

Name of an assay

groups

Name of all or subset of groups

choice
"table" = correlation table

"scatter" = scatterplot of each pair of columns/variables of
selected groups

"hist" = histogram of each column/variables

"all" = all of 1,2,3 together

groupinfo

output of create_group or similar object.

...

additional arguments for base functions "chart.Correlation" and "pairs"

Value

Displays various plots and tables as per the combination of input arguments

Author(s)

Subhadeep Das <[email protected]>

Examples

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chart_correlation(name = multi_assay,
Assay = "H2az", groupinfo = groupinfo_ext,
groups = "WE", choice = "table")

subhadeep1024/OMICsPCA documentation built on Sept. 30, 2018, 1 p.m.