prop.vars: Accessor for the 'prop.vars' slot of a 'svplsSurr' object

In sutigit21/SVAPLSseq: SVAPLSseq-An R package to adjust for the hidden factors of variability in differential gene expression studies based on RNAseq data

Description

Accessor for the 'prop.vars' slot of a 'svplsSurr' object

Usage

prop.vars(object)

## S4 method for signature 'svplsSurr'
prop.vars(object)

## S4 method for signature 'svplsSurr'
prop.vars(object)

Arguments

object

a svplsSurr object

Value

A vector of the variance proportions in the data space explained by the significant surrogate variables obtained from svplsSurr

Examples

data(sim.dat)
group = as.factor(c(rep(1, 10), rep(-1, 10)))
sv = svplsSurr(sim.dat, group)
prop.vars(sv)

sutigit21/SVAPLSseq documentation built on May 30, 2019, 8:43 p.m.