pvs.adj: Accessor for the 'pvs.adj' slot of a 'svplsTest' object

In sutigit21/SVAPLSseq: SVAPLSseq-An R package to adjust for the hidden factors of variability in differential gene expression studies based on RNAseq data

Description

Accessor for the 'pvs.adj' slot of a 'svplsTest' object

Usage

pvs.adj(object)

## S4 method for signature 'svplsTest'
pvs.adj(object)

## S4 method for signature 'svplsTest'
pvs.adj(object)

Arguments

object

a svplsTest object

Value

A vector of the FDR-adjusted pvalues for the different genes, obtained from svplsTest.

Examples

data(sim.dat)
group = as.factor(c(rep(1, 10), rep(-1, 10)))
sv = svplsSurr(sim.dat, group)
surr = surr(sv)
fit = svplsTest(dat = sim.dat, group = group, surr = surr, test = "Wald")
pvs.adj(fit)

sutigit21/SVAPLSseq documentation built on May 30, 2019, 8:43 p.m.