cBioFetchR-package: Visualize profiling data on a NaviCell map
In sysbio-curie/cBioFetchR: Extract data from cBioPortal in a way that they can easily be exported to NaviCell
Description
Author(s)
References
Examples
Description
Provides functions to visualize any kind of biological profiling data on a NaviCell map in a biologically relevant manner.
Also contains functions to import datasets from cBioportal which format them for NaviCell export.
Author(s)
Mathurin Dorel mathurin.dorel@curie.fr
Maintainer : Mathurin Dorel mathurin.dorel@curie.fr
References
TODO
Examples
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conn = CGDS("http://www.cbioportal.org/")
#Selection of the study id
studies = getCancerStudies(conn)
st_id = studies$cancer_study_id[1]
# Fetch data from cBioPortal for ACSN genes
fetcher= cBioNCviz(genes_list="http://acsn.curie.fr/files/acsn_v1.1.gmt", cell_type="Acute Myeloid Leukemia", cbio_data=genes_data)
# Save Data
saveDat(fetcher)
sysbio-curie/cBioFetchR documentation built on May 31, 2019, 12:48 a.m.
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Description Author(s) References Examples
Description
Provides functions to visualize any kind of biological profiling data on a NaviCell map in a biologically relevant manner. Also contains functions to import datasets from cBioportal which format them for NaviCell export.
Author(s)
Mathurin Dorel mathurin.dorel@curie.fr
Maintainer : Mathurin Dorel mathurin.dorel@curie.fr
References
TODO
Examples
1 2 3 4 5 6 7 8 9 10 | conn = CGDS("http://www.cbioportal.org/")
#Selection of the study id
studies = getCancerStudies(conn)
st_id = studies$cancer_study_id[1]
# Fetch data from cBioPortal for ACSN genes
fetcher= cBioNCviz(genes_list="http://acsn.curie.fr/files/acsn_v1.1.gmt", cell_type="Acute Myeloid Leukemia", cbio_data=genes_data)
# Save Data
saveDat(fetcher)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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