listStudies: List of c-Bioportal studies

In sysbio-curie/cBioFetchR: Extract data from cBioPortal in a way that they can easily be exported to NaviCell

Description

Get the list of c-Bioportal cancer studies. Allow the specification of cancer types to limit the search.

Usage

listStudies(conn = "http://www.cbioportal.org/", query = "all",
  case_sensitive = FALSE)

Arguments

conn	A CGDS connexion object
query	A string specifying a subtype of cancer to look for (leave to "all" to list all available studies)
case_sensitive	A boolean specifying whether the query should be case sensitive (does not apply if query == "all")

Value

A data.frame with c-Bioportal studies ids (cancer_study_id), name (name) and description (description)

See Also

cBioConnect, cgdsr::CGDS, cgdsr::getCancerStudies

sysbio-curie/cBioFetchR documentation built on May 31, 2019, 12:48 a.m.