Man pages for syspremed/PanNETassigner
A cross-species analysis in pancreatic neuroendocrine tumors reveals molecular subtypes with distinctive clinical, metastatic, developmental, and metabolic characteristics.
| CrossSpeciesCombat | A function for merging expression data from human and mouse... |
| CrossSpeciesCombat.ordered | Ordered samples across species for Combat. |
| enrich | Performs hypergeometric test of association between miR... |
| EnrichmentAnalysis.labels1 | The PanNETassinger-miR subtypes for enrichment analysis. |
| EnrichmentAnalysis.labels2 | The PanNETassinger-mRNA subtypes for enrichment analysis. |
| human.data | Human PanNET core clinical gene expression dataset. |
| MLPvsother | Find gene signature associated with combined MLP-1 and MLP-2... |
| MLPvsother.Indata | Combined MLP-1 and MLP-2 subtypes vs other subtypes from core... |
| MLPvsother.Indlabdata | Mlp vs others NMF labels. |
| mouse.data | Mouse gene expression dataset. |
| nmfconsensus | Non matrix factorization (NMF) |
| PanNETassigner-package | A cross-species analysis in pancreatic neuroendocrine tumors... |
| PanNETsubtypesmicRNA | PanNET subtyping based on core clinical miR expression data. |
| PanNETsubtypesmicRNA.Indata | micRNA expression data |
| PanNETsubtypesmicRNAVal | Validation of micRNA expression PanNET subtypes using miR... |
| PanNETsubtypesmicRNAVal.Indata | micRNA expression validation data |
| PanNETsubtypesmicRNAVal.IndSAMdata | PanNETassigner micRNA expression signature. |
| PanNETsubtypesmRNA | PanNET subtyping based on mRNA expression data. |
| PanNETsubtypesmRNA.Indata | mRNA expression data |
| PanNETsubtypesmRNAVal | Validation of gene expression PanNET subtypes using gene... |
| PanNETsubtypesmRNAVal.Indata | Gene expression validation dataset for PanNET subtypes. |
| PanNETsubtypesmRNAVal.IndSAMdata | PanNETassigner gene expression signature. |
| screenExpr | Screens data from the original expression files |
