PanNETsubtypesmicRNAVal: Validation of micRNA expression PanNET subtypes using miR...
In syspremed/PanNETassigner: A cross-species analysis in pancreatic neuroendocrine tumors reveals molecular subtypes with distinctive clinical, metastatic, developmental, and metabolic characteristics.
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
This function selects SAM gene signature for PanNET miR expression subtypes in the validation dataset. NMF is employed to
indentify PanNET subtypes in this dataset.
Usage
1
PanNETsubtypesmicRNAVal(Indata, IndSAMdata)
Arguments
Indata
PanNETsubtypesmicRNAVal.Indata is the validation dataset. microRNAs are on the rows and the first column contain the microRNA names.
IndSAMdata
PanNETsubtypesmicRNAVal.IndSAMdata contain SAM micRNAs signature for finding the PanNET subtypes.
Details
The SAM gene signature in PanNETsubtypesmicRNAVal.IndSAMdata is selected from the validation dataset PanNETsubtypesmicRNAVal.Indata and NMF is employed to discover PanNET miR expression subtypes in this dataset.
Value
The output of this function include NMF micRNA expression subtypes saved in your working directory under PanNetResults/micRNAVal folder.
Author(s)
Anguraj Sadanandam anguraj.sadanandam@icr.ac.uk
References
Anguraj Sadanandam, et all (2015). A cross-species analysis in pancreatic neuroendocrine tumors reveals molecular subtypes with distinctive clinical, metastatic, developmental, and metabolic characteristics. Cancer Discovery.
Examples
1
2
3
4
5
## Two datasets are required for this function
data(PanNETsubtypesmicRNAVal.Indata)
data(PanNETsubtypesmicRNAVal.IndSAMdata)
## Run the function
PanNETsubtypesmicRNAVal(PanNETsubtypesmicRNAVal.Indata,PanNETsubtypesmicRNAVal.IndSAMdata)
syspremed/PanNETassigner documentation built on May 31, 2019, 12:48 a.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
This function selects SAM gene signature for PanNET miR expression subtypes in the validation dataset. NMF is employed to indentify PanNET subtypes in this dataset.
Usage
1 | PanNETsubtypesmicRNAVal(Indata, IndSAMdata)
|
Arguments
Indata |
PanNETsubtypesmicRNAVal.Indata is the validation dataset. microRNAs are on the rows and the first column contain the microRNA names. |
IndSAMdata |
PanNETsubtypesmicRNAVal.IndSAMdata contain SAM micRNAs signature for finding the PanNET subtypes. |
Details
The SAM gene signature in PanNETsubtypesmicRNAVal.IndSAMdata is selected from the validation dataset PanNETsubtypesmicRNAVal.Indata and NMF is employed to discover PanNET miR expression subtypes in this dataset.
Value
The output of this function include NMF micRNA expression subtypes saved in your working directory under PanNetResults/micRNAVal folder.
Author(s)
Anguraj Sadanandam anguraj.sadanandam@icr.ac.uk
References
Anguraj Sadanandam, et all (2015). A cross-species analysis in pancreatic neuroendocrine tumors reveals molecular subtypes with distinctive clinical, metastatic, developmental, and metabolic characteristics. Cancer Discovery.
Examples
1 2 3 4 5 | ## Two datasets are required for this function
data(PanNETsubtypesmicRNAVal.Indata)
data(PanNETsubtypesmicRNAVal.IndSAMdata)
## Run the function
PanNETsubtypesmicRNAVal(PanNETsubtypesmicRNAVal.Indata,PanNETsubtypesmicRNAVal.IndSAMdata)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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