Description Usage Arguments Details Value Author(s) References Examples
This function selects SAM gene signature for PanNET miR expression subtypes in the validation dataset. NMF is employed to indentify PanNET subtypes in this dataset.
1 | PanNETsubtypesmicRNAVal(Indata, IndSAMdata)
|
Indata |
PanNETsubtypesmicRNAVal.Indata is the validation dataset. microRNAs are on the rows and the first column contain the microRNA names. |
IndSAMdata |
PanNETsubtypesmicRNAVal.IndSAMdata contain SAM micRNAs signature for finding the PanNET subtypes. |
The SAM gene signature in PanNETsubtypesmicRNAVal.IndSAMdata is selected from the validation dataset PanNETsubtypesmicRNAVal.Indata and NMF is employed to discover PanNET miR expression subtypes in this dataset.
The output of this function include NMF micRNA expression subtypes saved in your working directory under PanNetResults/micRNAVal folder.
Anguraj Sadanandam anguraj.sadanandam@icr.ac.uk
Anguraj Sadanandam, et all (2015). A cross-species analysis in pancreatic neuroendocrine tumors reveals molecular subtypes with distinctive clinical, metastatic, developmental, and metabolic characteristics. Cancer Discovery.
1 2 3 4 5 | ## Two datasets are required for this function
data(PanNETsubtypesmicRNAVal.Indata)
data(PanNETsubtypesmicRNAVal.IndSAMdata)
## Run the function
PanNETsubtypesmicRNAVal(PanNETsubtypesmicRNAVal.Indata,PanNETsubtypesmicRNAVal.IndSAMdata)
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.