MLPvsother: Find gene signature associated with combined MLP-1 and MLP-2...

Description Usage Arguments Details Value Author(s) References Examples

Description

Find gene signature associated with combined MLP-1 and MLP-2 vs other PanNET subtypes using SAM.

Usage

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MLPvsother(Indata, Indlabdata)

Arguments

Indata

expression data

Indlabdata

Data with NMF labels

Details

Find gene signature associated with combined MLP-1 and MLP-2 vs other PanNET subtypes using SAM.

Value

The output of this function include SAM genes saved in your working directory under PanNetResults/MLPvsother folder.

Author(s)

Anguraj Sadanandam anguraj.sadanandam@icr.ac.uk

References

Anguraj Sadanandam, et all (2015). A cross-species analysis in pancreatic neuroendocrine tumors reveals molecular subtypes with distinctive clinical, metastatic, developmental, and metabolic characteristics. Accepted.

Examples

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## Two datasets are required for this function 
data(MLPvsother.Indata)
data(MLPvsother.Indlabdata)
## Run the function
MLPvsother(MLPvsother.Indata,MLPvsother.Indlabdata)

syspremed/PanNETassigner documentation built on May 31, 2019, 12:48 a.m.