| CCP | Consensus clustering |
| commonProp | Calculating the proportion of maximum intersection (PMI) |
| hyperClust2 | Hypergeometric test of cluster overlap |
| hyperClust3 | Hypergeometric test of community overlap |
| inputCond | Cutoff chooser |
| nodeEdge | Node-edge graphs |
| pamCentroids | PAM centroids |
| performClust | polyCluster clustering |
| polyCluster | polyCluster pipeline |
| read.gct | Read a text file of expression values |
| read.txt | Read a text file of expression values |
| testClust | Test clustering result. |
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