hyperClust3: Hypergeometric test of community overlap
In syspremed/polyClustR: polyClustR: A pipeline to reconcile clustering solutions
Description
Usage
Arguments
Details
Value
Description
Compares clusters discovered from reconciliation methods with
known phenotypes via a hypergeometric test and creates a
pdf heatmap to show the resulting p values.
Usage
1
hyperClust3(clusterTable, outfile, l)
Arguments
clusterTable
Numeric matrix. A matrix giving the number of samples shared between all clusters and all phenotypes
outfile
Character string. Prepended to the p value and heatmap filenames
l
The output of a call to performClust.
Details
Not intended for use outside of a call to polyCluster.
Value
Returns an updated list l.
syspremed/polyClustR documentation built on May 31, 2019, 12:49 a.m.
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Description Usage Arguments Details Value
Description
Compares clusters discovered from reconciliation methods with known phenotypes via a hypergeometric test and creates a pdf heatmap to show the resulting p values.
Usage
1 | hyperClust3(clusterTable, outfile, l)
|
Arguments
clusterTable |
Numeric matrix. A matrix giving the number of samples shared between all clusters and all phenotypes |
outfile |
Character string. Prepended to the p value and heatmap filenames |
l |
The output of a call to |
Details
Not intended for use outside of a call to polyCluster.
Value
Returns an updated list l.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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