Inferring the Tree of Cells

calculate_summary_values | Calculate Summary Statistics |

convert_to_integer | Turn a matrix of expression values into integer counts |

fit_ZINB | Calculate Summary Statistics |

row_mean_aggregate | Row Means/Variances by Factor |

Sim_add_dropouts | Adds dropouts to a vector of simulated counts |

Sim_childmeans | Calculate Child Mean Expression |

Sim_fit_gamma | Fit a gamma distribution to observed data |

Sim_rndtree | Create a random tree |

Sim_simstfinish | Simulate data from a tree. |

Sim_simtree | Simulate data from a tree. |

Sim_treecells | Generate the mean expression of genes through a tree |

Sim_treemeans | Generate the mean expression of genes through a tree |

Sim_ZINB | Simulate counts from a zero-inflated negative binomial. |

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