API for tanaylab/methylayer
Layered modeling of tumor methylation
| Global functions | |
|---|---|
| %>% | Man page |
| %||% | Man page |
| calc_gene_cor_before_after_deconv | Man page Source code |
| calc_norm_immune_cafs_meth | Source code |
| cis_em_genomic | Man page Source code |
| cis_em_promoters | Man page Source code |
| cluster_em_cross_cor | Man page Source code |
| coord_to_promoter_names | Man page Source code |
| deconv_TME | Man page Source code |
| downscale_matrix | Source code |
| em_cross_cor | Man page Source code |
| export_em_cross_mods | Man page Source code |
| feats_to_knn_matrix | Man page Source code |
| filter_meth_mat_by_avg | Source code |
| gene_promoter_cors | Man page Source code |
| get_TME_genes | Man page Source code |
| get_TME_meth_scores | Source code |
| get_downscale_block | Source code |
| get_downscale_grid | Source code |
| gintervals.distance | Source code |
| immune_cafs_signature_from_clust | Man page Source code |
| init_tcga_brca_example | Source code |
| intervs_to_mat | Man page Source code |
| mat_to_intervs | Man page Source code |
| methylayer | Man page |
| methylayer-package | Man page |
| normalize_immune_cafs_meth | Man page Source code |
| normalize_mat_knn | Man page Source code |
| null-default | Man page |
| plot_em_cross_cor | Man page Source code |
| plot_meth_mat_cm | Source code |
| plot_norm_vs_raw_gene_scatter | Man page Source code |
| promoter_names_to_coord | Source code |
| rank_genomic_cis_matrix | Source code |
| shuffle_each_column | Man page Source code |
| tgs_cor_large_matrices | Source code |
