plot_em_cross_cor: Plot clustered Expression-methylation cross-correlation...

In tanaylab/methylayer: Layered modeling of tumor methylation

Description

Plot clustered Expression-methylation cross-correlation matrix

Usage

plot_em_cross_cor(
  em_clust,
  fig_ofn = NULL,
  width = 1000,
  height = 1400,
  k_meth = max(meth_clust$clust),
  k_exp = max(expr_clust$clust),
  km_meth = NULL,
  km_exp = NULL,
  downscale = FALSE,
  zlim = c(-0.6, 0.6),
  colors = c("black", "darkred", "white", "darkblue", "cyan")
)

Arguments

em_clust	output of cluster_em_cross_cor
fig_ofn	filename of the output figure
width	width of the saved figure
height	height of the saved figure
k_meth	k for cutree of matrix rows
k_expr	k for cutree of matrix columns

tanaylab/methylayer documentation built on Dec. 23, 2021, 7:45 a.m.