immune_cafs_signature_from_clust: Define immune and CAF signatures
In tanaylab/methylayer: Layered modeling of tumor methylation

Define immune and CAF signatures

immune_cafs_signature_from_clust(
  em_clust,
  scale_feats = TRUE,
  caf_gene = "CAV1",
  immune_gene = "CD3D"
)

`em_clust`	output of `cluster_em_cross_cor`
`scale_feats`	scale features (recommended)
`caf_gene`	name of gene that is inside the CAF cluster (default: "CAV1")
`immune_gene`	name of gene that is inside the immune cluster (default: "CD3D")

matrix with 'CAF' and 'immune' score for each sample

tanaylab/methylayer documentation built on Dec. 23, 2021, 7:45 a.m.

tanaylab/methylayer index

README.md

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