calc_gene_cor_before_after_deconv: calculate expression of loci to specific genes before and...
In tanaylab/methylayer: Layered modeling of tumor methylation
Description
Usage
Arguments
Value
View source: R/TME-deconvolution.R
Description
calculate expression of loci to specific genes before and after TME deconvolution
Usage
1
calc_gene_cor_before_after_deconv(deconv_list, raw_meth, genes)
Arguments
deconv_list
output of deconv_TME.
raw_meth
intervals set with raw methylation
genes
vector with gene names
Value
data frame with intervals set that are in raw_meth and normalized methylation and their correlations to the gene expression in the raw and normalized methylation datasets.
tanaylab/methylayer documentation built on Dec. 23, 2021, 7:45 a.m.
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Description Usage Arguments Value
View source: R/TME-deconvolution.R
Description
calculate expression of loci to specific genes before and after TME deconvolution
Usage
1 | calc_gene_cor_before_after_deconv(deconv_list, raw_meth, genes)
|
Arguments
deconv_list |
output of |
raw_meth |
intervals set with raw methylation |
genes |
vector with gene names |
Value
data frame with intervals set that are in raw_meth and normalized methylation and their correlations to the gene expression in the raw and normalized methylation datasets.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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