Files in tanaylab/methylayer
Layered modeling of tumor methylation
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/RcppExports.R
R/TCGA-BRCA.R
R/TME-deconvolution.R
R/TME-genes.R
R/cis-genomic.R
R/cis-promoters.R
R/em-cross.R
R/methylayer-package.R
R/normalize-em-cross.R
R/plot-em-cross.R
R/utils-pipe.R
R/utils.R
README.Rmd
README.md
images/methylayer.png
man/calc_gene_cor_before_after_deconv.Rd
man/cis_em_genomic.Rd
man/cis_em_promoters.Rd
man/cluster_em_cross_cor.Rd
man/coord_to_promoter_names.Rd
man/deconv_TME.Rd
man/em_cross_cor.Rd
man/export_em_cross_mods.Rd
man/feats_to_knn_matrix.Rd
man/figures/README-pressure-1.png
man/gene_promoter_cors.Rd
man/get_TME_genes.Rd
man/immune_cafs_signature_from_clust.Rd
man/intervs_to_mat.Rd
man/mat_to_intervs.Rd
man/methylayer-package.Rd
man/normalize_immune_cafs_meth.Rd
man/normalize_mat_knn.Rd
man/null-default.Rd
man/pipe.Rd
man/plot_em_cross_cor.Rd
man/plot_norm_vs_raw_gene_scatter.Rd
man/shuffle_each_column.Rd
src/Makevars
src/RcppExports.cpp
src/code.cpp
tests/testthat.R
