API for tanaylab/repguide
Design CRISPR guide RNAs against DNA repetitive sequences
| Global functions | |
|---|---|
| .annoConPos | Source code |
| .annoGuides | Source code |
| .bowtie | Source code |
| .bowtieIndex | Source code |
| .compCombinations | Source code |
| .compGuideScores | Source code |
| .compMismatchScore | Source code |
| .compMismatchUniverse | Source code |
| .exportGuides | Source code |
| .exportPlots | Source code |
| .importOrNot | Source code |
| .keepBSgenomeSequences | Source code |
| .kmerStats | Source code |
| .onLoad | Source code |
| .plotCpG | Source code |
| .plotTSS | Source code |
| .selBestKmers | Source code |
| .selBlacklistRegions | Source code |
| Repguide | Man page |
| addAlignments | Man page Source code |
| addCombinations | Man page Source code |
| addGuides | Man page Source code |
| addTargets | Man page Source code |
| blacklisted | Man page |
| clustGuides | Man page Source code |
| combinations | Man page |
| createGuideSet | Man page Source code |
| essential_genes | Man page |
| export | Man page |
| guideSet | Man page |
| guideSet-class | Man page |
| importKmers | Source code |
| importTEs | Source code |
| mappings | Man page |
| plotCombinations | Man page Source code |
| plotGuides | Man page |
| plotTargets | Man page Source code |
| repnames | Man page Source code |
| selGuides | Man page Source code |
