plotTargets: Generates targets QC plots
In tanaylab/repguide: Design CRISPR guide RNAs against DNA repetitive sequences

Description Usage Arguments Value See Also Examples

Computes multiple QC plots and arranges into a figure with subpanels:

a: Genomic copy-number vs average size (in kbs) of selected (red) vs all other families in guideSet.
b: Genomic copy-number of selected families on autosomes and sex chromosomes (other refers to alternative chromosome assemblies).
c: Size distribution of selected families.
d: Multiple sequence alignment of selected families. Rows represent individual loci and columns position on the alignment.
e: CpG density along the consensus model. Positions are identical to (d).
f: Position on the consensus model (as in e) of putative cis regulatory features.

1	plotTargets(guideSet)

guideSet

guideSet containing combinations.

list of ggplot objects.

addTargets(), and export()

## Not run: 
gs <- createGuideSet(Hsapiens, tes = te_annotation_df)
gs <- addTargets(gs, targets = 'LTR13A')
gs <- addGuides(gs, guide_length = 16)
gs <- plotGuides(gs)  

## End(Not run)