repnames: Returns transposable element families from guideSet
In tanaylab/repguide: Design CRISPR guide RNAs against DNA repetitive sequences

Description Usage Arguments Value See Also Examples

Retrieves all available families in the provided guideSet that match defined characteristics.

1	repnames(guideSet, pattern = NULL, fixed = FALSE)

`guideSet`	guideSet object to query.
`pattern`	Regular expression. Returns only families that match `pattern`.
`fixed`	Logical. If `TRUE`, `pattern` is matched as is.

Character vector.

createGuideSet()

## Not run: 
gs <- createGuideSet(genome = Hsapiens, tes = te_annotation_df)
families <- repnames(gs, pattern = 'LTR12') # returns all families containing 'LTR12' in their name.

# Using a pattern not found in guideSet will suggest similar hits, e.g.:
repnames(gs, pattern = 'LTR5HS')

## End(Not run)