Files in tanaylab/reputils
Utility functions for working with transposable elements
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/check.R
R/compute.R
R/curate.R
R/distribute.R
R/export.R
R/import.R
R/misc.R
R/package-Reputils.R
R/plot.R
R/transform.R
R/wrapper.R
R/zzz.R
_pkgdown.yml
docs/articles/Mapping_QC.html
docs/articles/Mapping_QC_files/figure-html/unnamed-chunk-7-1.png
docs/articles/Prerequisites.html
docs/articles/Reputils.html
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/logo.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Reputils.html
docs/reference/addSeq.html
docs/reference/figures/logo.png
docs/reference/importBAM.html
docs/reference/importDFAM.html
docs/reference/importRMSK.html
docs/reference/importUCSC.html
docs/reference/index.html
docs/reference/mafft.html
docs/reference/msaToLong.html
docs/reference/mutateReads.html
docs/reference/mutateSeqs.html
index.Rmd
logo.ai
logo.png
logo.svg
man/Reputils.Rd
man/addSeq.Rd
man/checkFormat.Rd
man/chunk.Rd
man/chunkFiles.Rd
man/curateGenes.Rd
man/curateTEs.Rd
man/deduplicateBAM.Rd
man/downsamp.Rd
man/getTSS.Rd
man/grapes-fin-grapes.Rd
man/importBAM.Rd
man/importDFAM.Rd
man/importRMSK.Rd
man/importTEs.Rd
man/importUCSC.Rd
man/longToSparse.Rd
man/mafft.Rd
man/msaToLong.Rd
man/mutateReads.Rd
man/mutateSeqs.Rd
man/splitBAM.Rd
man/varmean.Rd
man/writeMM2.Rd
vignettes/Mapping_QC.Rmd
vignettes/Prerequisites.Rmd
