In tanaylab/reputils: Utility functions for working with transposable elements

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Reputils

The Reputils R package is a beta development version to facilitate analysis of transposable elements.

Features include:

• Import of various TE coodinate formats
• Curation of TE intervals
• Mapping benchmarking

More details on the usage of Reputils is available in the package vignette.

Installation

# Install BiocManager (in case you haven't already)
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# Install Reputils
install.packages('Reputils', repos = 'tanaylab.bitbucket.io/repo')

Note: Reputils requires R version 3.5 or higher. The package was tested on linux and macbook machines, but not on Windows. For improved speed performance, we recommend a multi-CPU/core workstation.

tanaylab/reputils documentation built on Nov. 5, 2019, 9:58 a.m.