Files in tbates/umx

Structural Equation Modeling and Twin Modeling in R

NEWS.md R/TRHG_code.R R/build_run_modify.R R/datasets.R R/deprecated.R R/fit_and_reporting.R R/lavanify2ram.R R/misc_and_utility.R R/package.R R/tmx.R R/umxCLPM.R R/umxDoC.R R/umxDoCbyPath.R R/umxMRDoC.R R/umxMatrixFree.R R/umxPower.R R/umx_build_high_level_models.R R/umx_build_polychoricMatrix3.R R/umx_build_umxACEv.R R/umx_build_umxGxEbiv.R R/umx_build_umxSexLim.R R/umx_build_umxSimplex.R R/umx_fit_stash_CIs.R R/umx_fit_umxFitIndices.R R/xmu.R R/xmu_make_top_twin_models.R README.md cran-comments.md inst/developer/build OpenMx.md inst/developer/deprecated_old_twin_versions.R inst/developer/function_ideas/CP rotation.R inst/developer/function_ideas/Mendelian_Randomization tcb.R inst/developer/function_ideas/code dropped in Sept 2019.R inst/developer/function_ideas/definition variables/umx example of using a definition variable in RAM.R inst/developer/function_ideas/deprecated.R inst/developer/function_ideas/growth/Matrix Gompertx.R inst/developer/function_ideas/growth/baygomnew.R inst/developer/function_ideas/latent_growth curve.R inst/developer/function_ideas/lmer in umx.R inst/developer/function_ideas/lmer_work/multilevel.R inst/developer/function_ideas/lmer_work/univ sem lmer example.R inst/developer/function_ideas/lmer_work/v67i01.pdf inst/developer/function_ideas/moved to OpenMx/mxSE.R inst/developer/function_ideas/ordinal WLS/Broken Tobit type example.R inst/developer/function_ideas/ordinal WLS/WLS work.R inst/developer/function_ideas/ordinal WLS/ordinal_play.R inst/developer/function_ideas/sensitivity_analysis.R inst/developer/function_ideas/two DV moderation GxE script to look at.R inst/developer/function_ideas/umxGroup.R inst/developer/function_ideas/umx_build_umxACEcov_fixed.R inst/developer/tests to finish/test_umxACE.r inst/developer/tests to finish/test_umxACEcov.r inst/developer/tests to finish/test_umxCP.r inst/developer/tests to finish/test_umxEFA.r inst/developer/tests to finish/test_umxGXE.r inst/developer/tests to finish/test_umxIP.r inst/developer/tests to finish/test_umxLabel.r inst/developer/tests to finish/test_umxModify.r inst/developer/tests to finish/test_umxPadAndPruneForDefVars.r inst/developer/tests to finish/test_umxPath.r inst/developer/tests to finish/test_umxRun.r inst/developer/tests to finish/test_xmuValues.r inst/developer/umx.Rmd man/Fischbein_wt.Rd man/FishersMethod.Rd man/GFF.Rd man/RMSEA.MxModel.Rd man/RMSEA.Rd man/RMSEA.summary.mxmodel.Rd man/SE_from_p.Rd man/bucks.Rd man/deg2rad.Rd man/dl_from_dropbox.Rd man/docData.Rd man/extractAIC.MxModel.Rd man/figures/ACEcovOnMeans.pdf man/figures/ACEcovVarianceModel.pdf man/figures/ACEmatrix.pdf man/figures/ACEunivariate.pdf man/figures/ACEv.pdf man/figures/CP.pdf man/figures/DiffMZRainMud.R man/figures/DiffMZRainMud.pdf man/figures/DiffMZexample.pdf man/figures/DiscTwinsExample.pdf man/figures/DoC.pdf man/figures/Duncan.pdf man/figures/GxE.pdf man/figures/GxEbiv.pdf man/figures/IP.pdf man/figures/TSLS.pdf man/figures/discordantCausalPatterns.R man/figures/discordantCausalPatterns.pdf man/figures/formative.pdf man/figures/power.pdf man/figures/reflective.pdf man/figures/simplex.pdf man/figures/sketch.pdf man/figures/umxEFA.pdf man/fin_JustifiedPE.Rd man/fin_NI.Rd man/fin_interest.Rd man/fin_percent.Rd man/fin_ticker.Rd man/fin_valuation.Rd man/geometric_mean.Rd man/ggAddR.Rd man/harmonic_mean.Rd man/install.OpenMx.Rd man/iqdat.Rd man/libs.Rd man/loadings.MxModel.Rd man/loadings.Rd man/noNAs.Rd man/oddsratio.Rd man/plot.MxLISRELModel.Rd man/plot.MxModel.Rd man/plot.MxModelTwinMaker.Rd man/plot.percent.Rd man/power.ACE.test.Rd man/print.RMSEA.Rd man/print.oddsratio.Rd man/print.percent.Rd man/print.reliability.Rd man/prolific_anonymize.Rd man/prolific_check_ID.Rd man/prolific_read_demog.Rd man/qm.Rd man/rad2deg.Rd man/reliability.Rd man/residuals.MxModel.Rd man/tmx_genotypic_effect.Rd man/tmx_is.identified.Rd man/tmx_show.MxMatrix.Rd man/tmx_show.MxModel.Rd man/tmx_show.Rd man/umx-deprecated.Rd man/umx.Rd man/umxACE.Rd man/umxACEcov.Rd man/umxACEv.Rd man/umxAPA.Rd man/umxAlgebra.Rd man/umxBrownie.Rd man/umxCI.Rd man/umxCI_boot.Rd man/umxCLPM.Rd man/umxCP.Rd man/umxCompare.Rd man/umxConfint.Rd man/umxCov2cor.Rd man/umxDiagnose.Rd man/umxDiffMZ.Rd man/umxDiscTwin.Rd man/umxDoC.Rd man/umxDoCp.Rd man/umxEFA.Rd man/umxEquate.Rd man/umxExamples.Rd man/umxExpCov.Rd man/umxExpMeans.Rd man/umxFactor.Rd man/umxFactorScores.Rd man/umxFitIndices.Rd man/umxFixAll.Rd man/umxGetLatents.Rd man/umxGetManifests.Rd man/umxGetModel.Rd man/umxGetParameters.Rd man/umxGxE.Rd man/umxGxE_window.Rd man/umxGxEbiv.Rd man/umxHetCor.Rd man/umxIP.Rd man/umxJiggle.Rd man/umxLav2RAM.Rd man/umxMI.Rd man/umxMRDoC.Rd man/umxMatrix.Rd man/umxMatrixFree.Rd man/umxModel.Rd man/umxModelNames.Rd man/umxModify.Rd man/umxParameters.Rd man/umxParan.Rd man/umxPath.Rd man/umxPlot.Rd man/umxPlotACE.Rd man/umxPlotACEcov.Rd man/umxPlotACEv.Rd man/umxPlotCP.Rd man/umxPlotDoC.Rd man/umxPlotFun.Rd man/umxPlotGxE.Rd man/umxPlotGxEbiv.Rd man/umxPlotIP.Rd man/umxPlotSexLim.Rd man/umxPlotSimplex.Rd man/umxPower.Rd man/umxRAM.Rd man/umxRAM2Lav.Rd man/umxReduce.Rd man/umxReduceACE.Rd man/umxReduceGxE.Rd man/umxRenameMatrix.Rd man/umxRotate.MxModelCP.Rd man/umxRotate.Rd man/umxRun.Rd man/umxSetParameters.Rd man/umxSexLim.Rd man/umxSimplex.Rd man/umxSummarizeTwinData.Rd man/umxSummary.MxModel.Rd man/umxSummary.Rd man/umxSummaryACE.Rd man/umxSummaryACEcov.Rd man/umxSummaryACEv.Rd man/umxSummaryCP.Rd man/umxSummaryDoC.Rd man/umxSummaryGxE.Rd man/umxSummaryGxEbiv.Rd man/umxSummaryIP.Rd man/umxSummaryMRDoC.Rd man/umxSummarySexLim.Rd man/umxSummarySimplex.Rd man/umxSuperModel.Rd man/umxThresholdMatrix.Rd man/umxTwinMaker.Rd man/umxTwoStage.Rd man/umxUnexplainedCausalNexus.Rd man/umxVersion.Rd man/umxWeightedAIC.Rd man/umx_APA_pval.Rd man/umx_aggregate.Rd man/umx_apply.Rd man/umx_array_shift.Rd man/umx_as_numeric.Rd man/umx_check.Rd man/umx_check_OS.Rd man/umx_check_model.Rd man/umx_check_names.Rd man/umx_check_parallel.Rd man/umx_cont_2_quantiles.Rd man/umx_cor.Rd man/umx_explode.Rd man/umx_explode_twin_names.Rd man/umx_file_load_pseudo.Rd man/umx_find_object.Rd man/umx_fun_mean_sd.Rd man/umx_get_bracket_addresses.Rd man/umx_get_checkpoint.Rd man/umx_get_options.Rd man/umx_grep.Rd man/umx_has_CIs.Rd man/umx_has_been_run.Rd man/umx_has_means.Rd man/umx_has_square_brackets.Rd man/umx_is_MxData.Rd man/umx_is_MxMatrix.Rd man/umx_is_MxModel.Rd man/umx_is_RAM.Rd man/umx_is_class.Rd man/umx_is_cov.Rd man/umx_is_endogenous.Rd man/umx_is_exogenous.Rd man/umx_is_numeric.Rd man/umx_is_ordered.Rd man/umx_long2wide.Rd man/umx_lower.tri.Rd man/umx_lower2full.Rd man/umx_make.Rd man/umx_make_MR_data.Rd man/umx_make_TwinData.Rd man/umx_make_fake_data.Rd man/umx_make_raw_from_cov.Rd man/umx_make_sql_from_excel.Rd man/umx_make_twin_data_nice.Rd man/umx_means.Rd man/umx_merge_randomized_columns.Rd man/umx_move_file.Rd man/umx_msg.Rd man/umx_names.Rd man/umx_open.Rd man/umx_open_CRAN_page.Rd man/umx_pad.Rd man/umx_paste_names.Rd man/umx_polychoric.Rd man/umx_polypairwise.Rd man/umx_polytriowise.Rd man/umx_print.Rd man/umx_r_test.Rd man/umx_read_lower.Rd man/umx_rename.Rd man/umx_rename_file.Rd man/umx_reorder.Rd man/umx_residualize.Rd man/umx_rot.Rd man/umx_round.Rd man/umx_scale.Rd man/umx_scale_wide_twin_data.Rd man/umx_score_scale.Rd man/umx_select_valid.Rd man/umx_set_auto_plot.Rd man/umx_set_auto_run.Rd man/umx_set_checkpoint.Rd man/umx_set_condensed_slots.Rd man/umx_set_cores.Rd man/umx_set_data_variance_check.Rd man/umx_set_dollar_symbol.Rd man/umx_set_optimization_options.Rd man/umx_set_optimizer.Rd man/umx_set_plot_file_suffix.Rd man/umx_set_plot_format.Rd man/umx_set_plot_use_hrbrthemes.Rd man/umx_set_separator.Rd man/umx_set_silent.Rd man/umx_set_table_format.Rd man/umx_stack.Rd man/umx_standardize.Rd man/umx_str_chars.Rd man/umx_str_from_object.Rd man/umx_string_to_algebra.Rd man/umx_strings2numeric.Rd man/umx_time.Rd man/umx_trim.Rd man/umx_var.Rd man/umx_wide2long.Rd man/umx_write_to_clipboard.Rd man/us_skinfold_data.Rd man/xmuHasSquareBrackets.Rd man/xmuLabel.Rd man/xmuLabel_MATRIX_Model.Rd man/xmuLabel_Matrix.Rd man/xmuLabel_RAM_Model.Rd man/xmuMI.Rd man/xmuMakeDeviationThresholdsMatrices.Rd man/xmuMakeOneHeadedPathsFromPathList.Rd man/xmuMakeTwoHeadedPathsFromPathList.Rd man/xmuMaxLevels.Rd man/xmuMinLevels.Rd man/xmuPropagateLabels.Rd man/xmuRAM2Ordinal.Rd man/xmuTwinSuper_Continuous.Rd man/xmuTwinSuper_NoBinary.Rd man/xmuTwinUpgradeMeansToCovariateModel.Rd man/xmuValues.Rd man/xmu_CI_merge.Rd man/xmu_CI_stash.Rd man/xmu_DF_to_mxData_TypeCov.Rd man/xmu_PadAndPruneForDefVars.Rd man/xmu_bracket_address2rclabel.Rd man/xmu_cell_is_on.Rd man/xmu_check_levels_identical.Rd man/xmu_check_needs_means.Rd man/xmu_check_variance.Rd man/xmu_clean_label.Rd man/xmu_data_missing.Rd man/xmu_data_swap_a_block.Rd man/xmu_describe_data_WLS.Rd man/xmu_dot_define_shapes.Rd man/xmu_dot_make_paths.Rd man/xmu_dot_make_residuals.Rd man/xmu_dot_maker.Rd man/xmu_dot_mat2dot.Rd man/xmu_dot_move_ranks.Rd man/xmu_dot_rank.Rd man/xmu_dot_rank_str.Rd man/xmu_equate_threshold_values.Rd man/xmu_extract_column.Rd man/xmu_get_CI.Rd man/xmu_lavaan_process_group.Rd man/xmu_make_TwinSuperModel.Rd man/xmu_make_bin_cont_pair_data.Rd man/xmu_make_mxData.Rd man/xmu_match.arg.Rd man/xmu_name_from_lavaan_str.Rd man/xmu_path2twin.Rd man/xmu_path_regex.Rd man/xmu_print_algebras.Rd man/xmu_rclabel_2_bracket_address.Rd man/xmu_relevel_factors.Rd man/xmu_safe_run_summary.Rd man/xmu_scale_wide_data.Rd man/xmu_set_sep_from_suffix.Rd man/xmu_show_fit_or_comparison.Rd man/xmu_simplex_corner.Rd man/xmu_standardize_ACE.Rd man/xmu_standardize_ACEcov.Rd man/xmu_standardize_ACEv.Rd man/xmu_standardize_CP.Rd man/xmu_standardize_IP.Rd man/xmu_standardize_RAM.Rd man/xmu_standardize_SexLim.Rd man/xmu_standardize_Simplex.Rd man/xmu_start_value_list.Rd man/xmu_starts.Rd man/xmu_summary_RAM_group_parameters.Rd man/xmu_twin_add_WeightMatrices.Rd man/xmu_twin_check.Rd man/xmu_twin_get_var_names.Rd man/xmu_twin_make_def_means_mats_and_alg.Rd man/xmu_twin_upgrade_selDvs2SelVars.Rd tests/testthat.R tests/testthat/test_lavaan.r tests/testthat/test_poly.r tests/testthat/test_residuals.MxModel.r tests/testthat/test_umxBuild_run_modify.r tests/testthat/test_umxCP.r tests/testthat/test_umxConfint.r tests/testthat/test_umxFactorScores.r tests/testthat/test_umxFitAndReporting.r tests/testthat/test_umxMatrixFree.R tests/testthat/test_umxPath.r tests/testthat/test_umxPower.r tests/testthat/test_umxRAM_etc.r tests/testthat/test_umx_ACE_etc.r tests/testthat/test_umx_APA_pval.r tests/testthat/test_umx_CLPM.r tests/testthat/test_umx_DOC_etc.r tests/testthat/test_umx_datasets.r tests/testthat/test_umx_has_CI.r tests/testthat/test_umx_has_means.r tests/testthat/test_umx_is_cov.r tests/testthat/test_umx_lower2full.r tests/testthat/test_umx_misc.r tests/testthat/test_umx_rename.r tests/testthat/test_umx_reorder.r tests/testthat/test_umx_residualize.r tests/testthat/test_umx_score_scale.r tests/testthat/test_umx_set.r tests/testthat/test_xmu_make_mxData.r tests/testthat/test_xmu_match.arg.r