Files in tdhock/PeakSegJoint
Joint Peak Detection in Several ChIP-Seq Samples
.Rbuildignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/PeakErrorSamples.R
R/PeakSegJoint.R
R/PeakSegJointError.R
R/PoissonLoss.R
R/binSum.R
R/clusterPeaks.R
R/features.R
R/multiClusterPeaks.R
README.org
build.sh
data/H3K27ac.TDH.MMM4.RData
data/H3K36me3.AM.immune.chunk21.RData
data/H3K36me3.TDH.other.chunk1.RData
data/H3K4me3.PGP.immune.chunk2.RData
data/H3K4me3.TDH.other.chunk8.RData
data/chr7.peaks.RData
data/demo.profiles.RData
data/overflow.list.RData
data/peak.at.profile.end.RData
data/peak1.infeasible.RData
man/ConvertModelList.Rd
man/GeomTallRect.Rd
man/H3K27ac.TDH.MMM4.Rd
man/H3K36me3.AM.immune.chunk21.Rd
man/H3K36me3.TDH.other.chunk1.Rd
man/H3K4me3.PGP.immune.chunk2.Rd
man/H3K4me3.TDH.other.chunk8.Rd
man/PeakErrorSamples.Rd
man/PeakSegJointError.Rd
man/PeakSegJointFaster.Rd
man/PeakSegJointFasterOne.Rd
man/PeakSegJointHeuristic.Rd
man/PeakSegJointHeuristicStep1.Rd
man/PeakSegJointHeuristicStep2.Rd
man/PeakSegJointSeveral.Rd
man/PoissonLoss.Rd
man/ProfileList.Rd
man/binSum.Rd
man/chr7.peaks.Rd
man/clusterPeaks.Rd
man/demo.profiles.Rd
man/featureMatrixJoint.Rd
man/multiClusterPeaks.Rd
man/overflow.list.Rd
man/peak.at.profile.end.Rd
man/peak1.infeasible.Rd
src/.dir-locals.el
src/OptimalPoissonLoss.c
src/OptimalPoissonLoss.h
src/PeakSegJoint.c
src/PeakSegJoint.h
src/PeakSegJointFaster.c
src/PeakSegJointFaster.h
src/PeakSegJoint_interface.c
src/binSum.c
src/binSum.h
src/clusterPeaks.c
src/clusterPeaks.h
src/multiClusterPeaks.c
src/multiClusterPeaks.h
src/profile.c
src/profile.h
tests/testthat.R
tests/testthat/test-CRAN-PeakSegJoint.R
tests/testthat/test-CRAN-binSum.R
tests/testthat/test-CRAN-converted.R
tests/testthat/test-CRAN-features.R
tests/testthat/test-CRAN-likelihood.R
tests/testthat/test-CRAN-no-zeros.R
tests/testthat/test-CRAN-trivial.R
tests/testthat/test-CRAN.R
tests/testthat/test-OTHER-real-data.R
