Files in tdhock/PeakSegJoint
Joint Peak Detection in Several ChIP-Seq Samples

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/PeakErrorSamples.R R/PeakSegJoint.R R/PeakSegJointError.R R/PoissonLoss.R R/binSum.R R/clusterPeaks.R R/features.R R/multiClusterPeaks.R
README.org
build.sh
data/H3K27ac.TDH.MMM4.RData
data/H3K36me3.AM.immune.chunk21.RData
data/H3K36me3.TDH.other.chunk1.RData
data/H3K4me3.PGP.immune.chunk2.RData
data/H3K4me3.TDH.other.chunk8.RData
data/chr7.peaks.RData
data/peak.at.profile.end.RData
data/peak1.infeasible.RData
man/ConvertModelList.Rd man/GeomTallRect.Rd man/H3K27ac.TDH.MMM4.Rd man/H3K36me3.AM.immune.chunk21.Rd man/H3K36me3.TDH.other.chunk1.Rd man/H3K4me3.PGP.immune.chunk2.Rd man/H3K4me3.TDH.other.chunk8.Rd man/PeakErrorSamples.Rd man/PeakSegJointError.Rd man/PeakSegJointHeuristic.Rd man/PeakSegJointHeuristicStep1.Rd man/PeakSegJointHeuristicStep2.Rd man/PeakSegJointSeveral.Rd man/PoissonLoss.Rd man/ProfileList.Rd man/binSum.Rd man/chr7.peaks.Rd man/clusterPeaks.Rd man/featureMatrixJoint.Rd man/multiClusterPeaks.Rd man/peak.at.profile.end.Rd man/peak1.infeasible.Rd
src/OptimalPoissonLoss.c
src/OptimalPoissonLoss.h
src/PeakSegJoint.c
src/PeakSegJoint.h
src/PeakSegJoint_interface.c
src/binSum.c
src/binSum.h
src/clusterPeaks.c
src/clusterPeaks.h
src/multiClusterPeaks.c
src/multiClusterPeaks.h
src/profile.c
src/profile.h
tests/testthat.R tests/testthat/test-functions-PeakSegJoint.R tests/testthat/test-functions-binSum.R tests/testthat/test-functions-converted.R tests/testthat/test-functions-features.R tests/testthat/test-functions-likelihood.R tests/testthat/test-functions-no-zeros.R tests/testthat/test-functions-real-data.R tests/testthat/test-functions-trivial.R
tdhock/PeakSegJoint documentation built on Aug. 12, 2017, 11 a.m.