Man pages for tdhock/PeakSegJoint
Joint Peak Detection in Several ChIP-Seq Samples

binSumbinSum
chr7.peakschr7 peaks
clusterPeaksclusterPeaks
ConvertModelListConvertModelList
featureMatrixJointfeatureMatrixJoint
GeomTallRectGeomTallRect
H3K27ac.TDH.MMM4Some histone ChIP-seq data
H3K36me3.AM.immune.chunk21H3K36me3_AM_immune chunk 21
H3K36me3.TDH.other.chunk1H3K36me3 TDH other chunk 1
H3K4me3.PGP.immune.chunk2H3K4me3 PGP immune chunk 2
H3K4me3.TDH.other.chunk8H3K4me3_TDH_other chunk 8 subset
multiClusterPeaksmultiClusterPeaks
peak1.infeasibledata where the PeakSegJoint model with 1 peak is infeasible
peak.at.profile.endpeak at profile end
PeakErrorSamplesPeakErrorSamples
PeakSegJointErrorPeakSegJointError
PeakSegJointHeuristicPeakSegJointHeuristic
PeakSegJointHeuristicStep1PeakSegJointHeuristicStep1
PeakSegJointHeuristicStep2PeakSegJointHeuristicStep2
PeakSegJointSeveralPeakSegJointSeveral
PoissonLossPoissonLoss
ProfileListProfileList
tdhock/PeakSegJoint documentation built on Aug. 12, 2017, 11 a.m.