run.pelt: run pelt

Description Usage Arguments Value Author(s)

Description

Smooth a profile using the PELT algorithm.

Usage

1
run.pelt(profile, penalty = "SIC", values = 0, FUN = cpt.mean)

Arguments

profile

A profile data.frame.

penalty

character specifying the penalty to use.

values

vector of penalty parameters to try.

FUN

PELT function to use.

Value

Matrix of smoothed profiles: nparam x nprobes.

Author(s)

Toby Dylan Hocking


tdhock/bams documentation built on May 31, 2019, 7:34 a.m.