motifFind: segment

Description Usage Arguments

Description

segmentation algorithm and then map transcript loci from genome loci

Usage

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motifFind(peakFile = NULL, species = NULL, plotmethod = "prob",
  sortCut = 5000)

Arguments

peakFile

The m6A peak file

species

The species, eg: "mm10", "hg38"

plotmethod

The method to plot motif, "prob" or "bit"

sortCut

Choose the most significant peaks to find motifs, this value means the amount of peaks you wanna choose


tengxufei/m6Ascan documentation built on May 18, 2019, 1:29 p.m.