get.win.counts: PeakCalling
In tengxufei/m6Ascan: scanning for m6A sites
Description
PeakCalling
Usage
1
2
3
get.win.counts(IP.bam = c(f2, f4, f6, f8), Input.bam = c(f1, f3, f5,
f7), gtf = win.gtf, strandSpecific = 0, isPairedEnd = F,
threads = 4)
Arguments
IP.bam
The ip bam file.
Input.bam
The input bam file.
gtf
The gtf format gene annotation file
strandSpecific
This option is the same in featureCounts, if your data is strandSpecfic, this value should be 1(stranded) or 2(reversely stranded), if not, it should be 0.
isPairedEnd
logical. Depends on your bam file is pair end or single end.
threads
Threads used for parallel running
tengxufei/m6Ascan documentation built on May 18, 2019, 1:29 p.m.
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Description
PeakCalling
Usage
1 2 3 | get.win.counts(IP.bam = c(f2, f4, f6, f8), Input.bam = c(f1, f3, f5,
f7), gtf = win.gtf, strandSpecific = 0, isPairedEnd = F,
threads = 4)
|
Arguments
IP.bam |
The ip bam file. |
Input.bam |
The input bam file. |
gtf |
The gtf format gene annotation file |
strandSpecific |
This option is the same in featureCounts, if your data is strandSpecfic, this value should be 1(stranded) or 2(reversely stranded), if not, it should be 0. |
isPairedEnd |
logical. Depends on your bam file is pair end or single end. |
threads |
Threads used for parallel running |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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