sig.test: glmTest

In tengxufei/m6Ascan: scanning for m6A sites

Description

significant test

Usage

sig.test(counts, condition = c("KO", "WT"), cutoff = 100, rep = 1)

Arguments

counts	counts file generated from previous step
condition	The input bam file.
cutoff	The gtf format gene annotation file
rep	This option is the same in featureCounts, if your data is strandSpecfic, this value should be 1(stranded) or 2(reversely stranded), if not, it should be 0.

tengxufei/m6Ascan documentation built on May 18, 2019, 1:29 p.m.