m_collect_rates: Extract transition and diversification rates from a...

In teofiln/utilhisse: A Collection of Functions for Summarising and Visualizing 'hisse' Results

Description

This is a function that wraps m_transition_matrix and m_diversification_rates so rates can be extracted in one step

Usage

m_collect_rates(model_fit, hidden_traits, character_states)

Arguments

model_fit	A muhisse.fit object
hidden_traits	Logical indicating whether the model has hidden states
character_states	A translation for the character states in the model in the order 00, 01, 10, 11

Value

A list with two components, the transition rates formatted as a rate matrix and a data frame of diversification rates

Examples

States <- c("mp", "mb", "fp", "fb")

# muhisse model
data("diatoms")
m_collect_rates(model_fit = diatoms$muhisse, hidden_traits=TRUE, character_states=States)

teofiln/utilhisse documentation built on Sept. 3, 2020, 2:55 p.m.