Files in terminological/uk-covid-datatools
Functions for sourcing, cleaning and calculating Rt for uk covid timeseries data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/ChessProcessingPipeline.R
R/CovidTimeseriesProvider.R
R/DataProvider.R
R/DataProviderController.R
R/DistributionFit.R
R/FileProvider.R
R/InternationalDatasetProvider.R
R/JuniperDatasetProvider.R
R/MetawardProcessingPipeline.R
R/NHSCapacityProvider.R
R/NHSDatasetProvider.R
R/PassthroughFilesystemCache.R
R/SPIMDatasetProvider.R
R/SerialIntervalProvider.R
R/SurvivalProcessingPipeline.R
R/TimeseriesProcessingPipeline.R
R/UKCodeMappingProvider.R
R/UKDemographicsProvider.R
R/UKGeographyProvider.R
R/UKPostcodeProvider.R
R/shared-utils.R
R/standard-types.R
R/ukcovidtools-PACKAGE.R
README.md
_config.yml
config.yml
data-raw/COVID Dates.xlsx
data-raw/COVID_UK_Dates.R
data-raw/ISO3166-2.xlsx
data-raw/ISO3166Mapping.R
data-raw/ISO3166_MANUAL.zip
data-raw/Mergers.R
data-raw/NPI_dataset_full_extract_03_11_2020.xlsx
data-raw/NUTS2021.xlsx
data/cogUKMap.rda
data/generationIntervalSimulation.rda
data/growthRateTest.rda
data/serialIntervalMetaAnalysis.rda
data/serialIntervalResampling.rda
data/ukCovidDates.rda
data/ukCovidObservationDelays.rda
data/ukCovidObservationIntervals.rda
docs/index.html
man/AbstractFileProvider.Rd
man/ChessProcessingPipeline.Rd
man/CovidTimeseriesProvider.Rd
man/DataProvider.Rd
man/DataProviderController.Rd
man/DistributionFit.Rd
man/HttpFileProvider.Rd
man/InternationalDatasetProvider.Rd
man/JuniperDatasetProvider.Rd
man/LocalFileProvider.Rd
man/MetawardProcessingPipeline.Rd
man/NHSCapacityProvider.Rd
man/NHSDatasetProvider.Rd
man/NonParametricSerialIntervalProvider.Rd
man/ParametricSerialIntervalProvider.Rd
man/PassthroughFilesystemCache.Rd
man/ReadOnlyFileProvider.Rd
man/S3FileProvider.Rd
man/SFTPFileProvider.Rd
man/SFTPOverSSHFileProvider.Rd
man/SPIMDatasetProvider.Rd
man/SerialIntervalProvider.Rd
man/SurvivalProcessingPipeline.Rd
man/TimeseriesProcessingPipeline.Rd
man/UKCodeMappingProvider.Rd
man/UKDemographicsProvider.Rd
man/UKGeographyProvider.Rd
man/UKPostcodeProvider.Rd
man/covidTimeseriesFormat.Rd
man/grapes-def-grapes.Rd
man/grapes-like-grapes.Rd
man/joinList.Rd
man/parameterDefinition.Rd
man/pipe.Rd
man/plotRibbons.Rd
man/printDataframeToString.Rd
man/sdFromProduct.Rd
man/sdFromRatio.Rd
man/ukcovidtools-package.Rd
tests/testthat.R
tests/testthat/test-NHSDatasetProvider.R
tests/testthat/test-SPIMDatasetProvider.R
tests/testthat/test-SerialIntervalProvider.R
tests/testthat/test-TimeseriesProcessingPipeline.R
uk-covid-datatools.Rproj
vignettes/.gitignore
vignettes/basic-usage.Rmd
vignettes/current-rt.bib
vignettes/current-rt/README.md
