SerialIntervalProvider: General timeseries processing

In terminological/uk-covid-datatools: Functions for sourcing, cleaning and calculating Rt for uk covid timeseries data

Description

General timeseries processing

General timeseries processing

Super classes

ukcovidtools::PassthroughFilesystemCache -> ukcovidtools::DataProvider -> ukcovidtools::CovidTimeseriesProvider -> SerialIntervalProvider

Methods

Public methods

• SerialIntervalProvider$new()

• SerialIntervalProvider$getSummary()

• SerialIntervalProvider$isUncertain()

• SerialIntervalProvider$printSerialInterval()

• SerialIntervalProvider$clone()

Inherited methods

• ukcovidtools::PassthroughFilesystemCache$getDaily()

• ukcovidtools::PassthroughFilesystemCache$getHashCached()

• ukcovidtools::PassthroughFilesystemCache$getSaved()

• ukcovidtools::PassthroughFilesystemCache$unloadCache()

• ukcovidtools::DataProvider$ageCatToFactor()

• ukcovidtools::DataProvider$ageToAgeCat()

• ukcovidtools::DataProvider$breakFromCats()

• ukcovidtools::DataProvider$cutByAge()

• ukcovidtools::DataProvider$download()

• ukcovidtools::DataProvider$downloadAndUntar()

• ukcovidtools::DataProvider$downloadAndUnzip()

• ukcovidtools::DataProvider$downloadDaily()

• ukcovidtools::DataProvider$labelsFromBreaks()

• ukcovidtools::DataProvider$normaliseAgeCat()

• ukcovidtools::DataProvider$normaliseGender()

• ukcovidtools::CovidTimeseriesProvider$complete()

• ukcovidtools::CovidTimeseriesProvider$completeAllRegions()

• ukcovidtools::CovidTimeseriesProvider$describe()

• ukcovidtools::CovidTimeseriesProvider$describeErrors()

• ukcovidtools::CovidTimeseriesProvider$fillAbsent()

• ukcovidtools::CovidTimeseriesProvider$fillAbsentAllRegions()

• ukcovidtools::CovidTimeseriesProvider$fillAbsentByRegion()

• ukcovidtools::CovidTimeseriesProvider$fixDatesAndNames()

• ukcovidtools::CovidTimeseriesProvider$setTruncation()

• ukcovidtools::CovidTimeseriesProvider$timeseriesQA()

• ukcovidtools::CovidTimeseriesProvider$trimNAs()

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Method new()

Usage

SerialIntervalProvider$new(providerController, offset = 0, ...)

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Method getSummary()

Usage

SerialIntervalProvider$getSummary(confint = c(0.025, 0.975))

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Method isUncertain()

Usage

SerialIntervalProvider$isUncertain()

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Method printSerialInterval()

Usage

SerialIntervalProvider$printSerialInterval(confint = c(0.025, 0.975))

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Method clone()

The objects of this class are cloneable with this method.

Usage

SerialIntervalProvider$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

terminological/uk-covid-datatools documentation built on June 24, 2021, 8:16 p.m.