JuniperDatasetProvider: SPIM private data

In terminological/uk-covid-datatools: Functions for sourcing, cleaning and calculating Rt for uk covid timeseries data

Description

SPIM private data

SPIM private data

Super classes

ukcovidtools::PassthroughFilesystemCache -> ukcovidtools::DataProvider -> ukcovidtools::CovidTimeseriesProvider -> JuniperDatasetProvider

Methods

Public methods

• JuniperDatasetProvider$new()

• JuniperDatasetProvider$getBristolData()

• JuniperDatasetProvider$bristolSurvivalSubset()

• JuniperDatasetProvider$clone()

Inherited methods

• ukcovidtools::PassthroughFilesystemCache$getDaily()

• ukcovidtools::PassthroughFilesystemCache$getHashCached()

• ukcovidtools::PassthroughFilesystemCache$getSaved()

• ukcovidtools::PassthroughFilesystemCache$unloadCache()

• ukcovidtools::DataProvider$ageCatToFactor()

• ukcovidtools::DataProvider$ageToAgeCat()

• ukcovidtools::DataProvider$breakFromCats()

• ukcovidtools::DataProvider$cutByAge()

• ukcovidtools::DataProvider$download()

• ukcovidtools::DataProvider$downloadAndUntar()

• ukcovidtools::DataProvider$downloadAndUnzip()

• ukcovidtools::DataProvider$downloadDaily()

• ukcovidtools::DataProvider$labelsFromBreaks()

• ukcovidtools::DataProvider$normaliseAgeCat()

• ukcovidtools::DataProvider$normaliseGender()

• ukcovidtools::CovidTimeseriesProvider$complete()

• ukcovidtools::CovidTimeseriesProvider$completeAllRegions()

• ukcovidtools::CovidTimeseriesProvider$describe()

• ukcovidtools::CovidTimeseriesProvider$describeErrors()

• ukcovidtools::CovidTimeseriesProvider$fillAbsent()

• ukcovidtools::CovidTimeseriesProvider$fillAbsentAllRegions()

• ukcovidtools::CovidTimeseriesProvider$fillAbsentByRegion()

• ukcovidtools::CovidTimeseriesProvider$fixDatesAndNames()

• ukcovidtools::CovidTimeseriesProvider$setTruncation()

• ukcovidtools::CovidTimeseriesProvider$timeseriesQA()

• ukcovidtools::CovidTimeseriesProvider$trimNAs()

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Method new()

Usage

JuniperDatasetProvider$new(providerController, fileProvider, ...)

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Method getBristolData()

Load Bristol data

Usage

JuniperDatasetProvider$getBristolData(path)

Arguments

path

- path to the bristol data file

Returns

raw Bristol data set

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Method bristolSurvivalSubset()

Load Bristol survival subset

Usage

JuniperDatasetProvider$bristolSurvivalSubset(bristolDf)

Arguments

path

- path to the ff100 file

Returns

Bristol survival subset

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Method clone()

The objects of this class are cloneable with this method.

Usage

JuniperDatasetProvider$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

terminological/uk-covid-datatools documentation built on June 24, 2021, 8:16 p.m.